BRLMM-P statistics

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Associated diseases

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BRLMM-P specifications

Information


Unique identifier OMICS_00707
Name BRLMM-P
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


BRLMM-P in publications

 (42)
PMCID: 5330487
PMID: 28245265
DOI: 10.1371/journal.pone.0172880

[…] santa clara, ca) following standard protocols. genotype calling was done with the affymetrix powertools (apt) software package including the full sample set, and using two genotyping algorithms, the brlmm-p and birdseed algorithms. in order to minimize genotyping errors, the program plink v 1.06 was used to merge the genotype results obtained with both algorithms, using the consensus call mode., […]

PMCID: 5316831
PMID: 28194015
DOI: 10.1038/ncomms14431

[…] website (http://www.affymetrix.com/catalog/prod100002/affy/affymetrix%c2%ae-mouse-diversity-genotyping-array#1_3)) were performed by using the affymetrix genotyping console software 4.2 with the brlmm-p algorithm. strength of each snp probe (average of log2 signals from both alleles) from each tumour sample was compared with that from the wt sample and the difference between these two […]

PMCID: 5417062
PMID: 28480134
DOI: 10.7717/peerj.3187

[…] qc was performed using affymetrix genotyping console software and genotype calling was done using affymetrix power tools (v1.15.0) with the axiom gt1 algorithm, which is a modified version of the brlmm-p algorithm that adapts generic prior cluster positions to the data using an em algorithm., the axiom biobank genotyping array from affymetrix includes ∼246,000 common genetic variants selected […]

PMCID: 5046179
PMID: 27694982
DOI: 10.1038/srep33891

[…] usa). genomic dna was genotyped utilizing a high-density affymetrix snp array that allows interrogation of over 17,000 snps performed at rml genomics unit, research technologies branch, niaid. the brlmm-p algorithm was used to call the snps as previously reported. genotypes were transferred to a spreadsheet for further analyses. snps within var, rifin and stevor genes were excluded to reduce […]

PMCID: 4726092
PMID: 26780889
DOI: 10.1038/srep19429

[…] santa clara, ca) following standard protocols. genotype calling was done with the affymetrix powertools (apt) software package including the full sample set, and using two genotyping algorithms, the brlmm-p and birdseed algorithms. in order to minimize genotyping errors, the program plink v 1.06 was used to merge the genotype results obtained with both algorithms, using the consensus call mode., […]


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