BroadPeak specifications


Unique identifier OMICS_00433
Name BroadPeak
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data A file of the genomic locations of broad peaks.
Output format BED
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline I. King Jordan <>

BroadPeak article

BroadPeak citation

PMCID: 5802526

[…] stem cell-derived neurons were generated by the epigenomics roadmap7. preprocessed broad peak calls for h3k4me3 were downloaded from peaks with a negative log10 p-value of 5 or greater were retained for further analysis, as described in the original macs protocol10., h3k4me3 chip-sequencing data from neun-positive […]

BroadPeak institution(s)
School of Biology, Georgia Institute of Technology, Atlanta, GA, USA; Buck Institute for Age Research, Novato, CA, USA; PanAmerican Bioinformatics Institute, Santa Marta, Magdalena, Colombia
BroadPeak funding source(s)
Supported by Alfred P. Sloan Research Fellowship in Computational and Evolutionary Molecular Biology [BR-4839] and Buck Institute Trust Fund.

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