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BroadPeak

Identifies broad peaks in diffuse ChIP-seq datasets. BroadPeak is a distinct approach for calling broad peaks in diffuse ChIP-seq datasets, and able to apply the algorithm to both real and simulated datasets to evaluate its performance. The software appears particularly well suited for calling large peaks as can be seen from the more contiguous characterization of known large peaks from the simulated datasets and the relatively broader distribution of called peak sizes.

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BroadPeak forum

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BroadPeak classification

BroadPeak specifications

Software type:
Package/Module
Restrictions to use:
None
Output format:
BED
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Output data:
A file of the genomic locations of broad peaks.
Operating system:
Unix/Linux
Stability:
Stable

BroadPeak distribution

versioning

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BroadPeak support

Documentation

Maintainer

  • I. King Jordan <>

Credits

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Publications

Institution(s)

School of Biology, Georgia Institute of Technology, Atlanta, GA, USA; Buck Institute for Age Research, Novato, CA, USA; PanAmerican Bioinformatics Institute, Santa Marta, Magdalena, Colombia

Funding source(s)

Supported by Alfred P. Sloan Research Fellowship in Computational and Evolutionary Molecular Biology [BR-4839] and Buck Institute Trust Fund.

Link to literature

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