BROCC specifications

Information


Unique identifier OMICS_14733
Name BROCC
Alternative name BLAST Read and Operational Taxonomic Unit Consensus Classifier
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data BLAST results
Output data Outputs a QIIME-formated taxonomy map and a log file
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Frederic Bushman <>

Publication for BLAST Read and Operational Taxonomic Unit Consensus Classifier

BROCC institution(s)
Department of Microbiology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Institute for Immunology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Department of Pathobiology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Department of Pathology, University of Michigan, Ann Arbor, MI, USA; Division of Gastroenterology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA; Center for Clinical Epidemiology and Biostatistics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA
BROCC funding source(s)
This work was supported by Project UH2DK083981, the Penn Genome Frontiers Institute; NIH AI087990, AI083480, U01AI095608; NIH AI39368; T32-AI060516; Penn Digestive Disease Center (P30 DK050306); The Joint Penn-CHOP Center for Digestive, Liver, and Pancreatic Medicine; S10RR024525; UL1RR024134, K24-DK078228; and the Howard Hughes Medical Institute.

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