BS-RNA specifications

Information


Unique identifier OMICS_13857
Name BS-RNA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data RNA bisulfite sequencing data
Output data The annotation result of BS-RNA is exported in BED (.bed) format, including locations, sequence context types (CG/CHG/CHH, H = A, T, or C), reference sequencing depths, cytosine sequencing depths, and methylation levels of covered cytosine sites on both Watson and Crick strands.
Output format BED
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 1.0
Stability Stable
Requirements Python, HISAT2, SAMtools, Bowtie2
Maintained Yes

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Publication for BS-RNA

BS-RNA institution(s)
BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China
BS-RNA funding source(s)
This study was supported by grant from the National Programs for High Technology Research and Development (863 Program; 2012AA020409, 2015AA020108), the Ministry of Science and technology of the People’s Republic of China; grant from the National Science Foundation of China (No. 31271386, No. 31100915 and No. 31471248).

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