Bscall
Provides a method for bisulfite sequencing data. Bscall was developed as a…
Provides a method for bisulfite sequencing data. Bscall was developed as a variant caller.
Bisulfite sequencing data analysis bioinformatics software tools
DNA methylation contributes to the epigenetic regulation of many key developmental processes including genomic imprinting, X-inactivation, genome stability and gene regulation. Bisulfite conversion of genomic DNA combined with next-generation sequencing (BS-seq) is widely used…
DNA methylation contributes to the epigenetic regulation of many key developmental processes including genomic imprinting, X-inactivation, genome stability and gene regulation. Bisulfite conversion of genomic DNA combined with next-generation sequencing (BS-seq) is widely used to measure the methylation state of a whole genome, the methylome, at single-base resolution (Lister et al., 2009; Bock et al., 2010; Harris et al., 2010).
BS-seq analysis steps
BS-seq analysis workflow
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GEMBS
GEMBS
Provides a bioinformatics pipeline specifically designed for the analysis of…
Provides a bioinformatics pipeline specifically designed for the analysis of large whole genome bisulfite sequencing (WGBS) data sets. GEMBS is based on two core modules: (i) GEM3, a high performance…
methyLiftover
methyLiftover
A method to map DNA methylation data from bisulfite sequencing approaches to…
A method to map DNA methylation data from bisulfite sequencing approaches to CpG sites measured with the widely used Illumina methylation bead-array platforms. Correlations and median absolute…
CGmapTools
CGmapTools
Provides a standard for bisulfite sequencing data related manipulation.…
Provides a standard for bisulfite sequencing data related manipulation. CGmapTools is a command-line bisulfite sequencing analysis toolkit with enhanced features on single-nucleotide variant (SNV)…
Curators for BS-seq analysis
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Shaojun Xie
Purdue university
