BS-SNPer statistics

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Tool usage distribution map

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Associated diseases

Associated diseases

BS-SNPer specifications

Information


Unique identifier OMICS_09802
Name BS-SNPer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequence data
Input format BAM, SAM
Operating system Unix/Linux, Mac OS
Programming languages C++, Perl
Computer skills Advanced
Stability Stable
Requirements
GCC, zlib
Maintained Yes

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Documentation


Maintainer


  • person_outline Shengjie Gao <>

Publication for BS-SNPer

BS-SNPer in publication

PMCID: 5656403
PMID: 29046582
DOI: 10.1038/s41559-017-0229-0

[…] or ratios, thus preserving information about sequencing depth for each site-sample combination. additionally, recent tools for calling snp genotypes directly from bs reads (e.g., bissnp and bs-snper) can help with constructing kinship/relatedness matrices, although not without error ()., most research on dna methylation to date has focused on humans and a handful of model systems. […]


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BS-SNPer institution(s)
Department of Biomedicine, Aarhus University, Aarhus, Denmark; BGI Co. Ltd., Shenzhen, China; School of Computer, National University of Defense Technology, Changsha, China; Departments of Biostatistics and Informatics, University of Colorado-Anschutz Medical campus; The fourth people's hospital of Shenzhen (Futian hospital), Shenzhen, China; Department of Molecular Medicine, Aarhus University Hospital, Aarhus, Denmark; Genomic Biology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia; Department of Obsterics and Gynecology,the First Hospital Affiliated to Suzhou University,Jiangsu Suzhou, China; College of Information Engineering, Qingdao University, Qingdao, China; BioInformatics Research Center (BIRC), Aarhus University, Aarhus, Denmark
BS-SNPer funding source(s)
This work was supported by The Danish Strategic Research Council (Innovation Fund Denmark).

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