BTR specifications


Unique identifier OMICS_18121
Name BTR
Alternative name BoolTraineR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A matrix with genes on the columns and cells on the row; a data frame with two columns, targets and update functions; and a single row data frame with genes as the columns.
Output format A Boolean model in tab-delimited file with each line being an edge; a Boolean model in a space-delimited file with each line being and edge; a Boolean model in comma-delimited file similar in format to the input file format; and a Boolean model simulated with initial state.
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Version 1.2.4
Stability Stable
Maintained Yes




No version available


  • person_outline Berthold Gottgens

Publication for BoolTraineR

BTR institution(s)
Department of Haematology, Wellcome Trust and MRC Cambridge Stem Cell Institute, Cambridge Institute for Medical Research, University of Cambridge, Cambridge, UK; Department of Computer Science, University of Leicester, Leicester, UK; Biostatistics Unit, Medical Research Council, Cambridge, UK; Microsoft Research Cambridge, Cambridge, UK; Department of Biochemistry, University of Cambridge, Cambridge, UK
BTR funding source(s)
Supported by Bloodwise, Cancer Research UK, the Biotechnology and Biological Sciences Research Council, NIHR Cambridge Biomedical Research Centre Award, Microsoft Research and core support grants by the Wellcome Trust to the Cambridge Institute for Medical Research and Wellcome Trust - MRC Cambridge Stem Cell Institute.

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