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Publication for BTXpred
In silico functional elucidation of uncharacterized proteins of Chlamydia abortus strain LLG
[…] rs that are involved in severity of the infection, and are envisaged as targets for developing drugs against pathogen . The virulence factor of nonhomologous proteins was identified by VICMpred and BTXpred [,]. Both methods for predicting virulence factor from protein sequence were based on SVM. […]
Genomic characterization of JG068, a novel virulent podovirus active against Burkholderia cenocepacia
[…] profiles were predicted using NEBcutter . Whole genome comparisons were performed using CoreGenesUniqueGenes (CGUG) with a cutoff score of 75 [,]. Screening for bacterial toxins was performed using BTXpred . Bacterial promoters, phage promoters, and rho-independent terminators were identified using prokaryotic Neural Network Promoter Prediction with a cutoff of 0.95 , PHIRE , and TransTerm […]
In silico synteny based comparative genomics approach for identification and characterization of novel therapeutic targets in Chlamydophila pneumoniae
[…] logous, and essential genes was searched using CELLO at http://cello.life.nctu.edu.tw/ . The bacterial toxin producing genes have been identified and classified into exotoxins and endotoxins using BTXpred tool at http://www.imtech.res.in/raghava/btxpred/ , further the proteins were subjected to Interpro server 41.0 at http://www.ebi.ac.uk/interpro/  to extrapolate the domains, signatures, […]
The Genome of Cronobacter sakazakii Bacteriophage vB_CsaP_GAP227 Suggests a New Genus within the Autographivirinae
[…] proteins with the type virus ϕKMV (36.7%) (), we propose that these four phages should be grouped in a new genus within the subfamily Autographivirinae.The proteome of phage GAP227 was screened using BTXpred server to detect potential bacterial toxins (). Since none were detected, phage GAP227 can be used as a potential controlling agent against C. sakazakii. […]
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