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BTXpred specifications

Information


Unique identifier OMICS_05709
Name BTXpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for BTXpred

BTXpred in publications

 (6)
PMCID: 5506502
PMID: 28409265
DOI: 10.1007/s00705-017-3349-6

[…] and maximum-likelihood methods []. the prediction of trna coding regions, lifestyle, and the presence of bacterial toxin genes was performed with the trnascan-se program [], phacts program [], and btxpred server [], respectively., pp2 morphology was observed by transmission electron microscopy (fig. s1). the phage had the characteristics of a member of the family podoviridae, with a head size […]

PMCID: 5351547
PMID: 28344832
DOI: 10.4155/fsoa-2016-0066

[…] that are involved in severity of the infection, and are envisaged as targets for developing drugs against pathogen []. the virulence factor of nonhomologous proteins was identified by vicmpred and btxpred [,]. both methods for predicting virulence factor from protein sequence were based on svm., homology-modeling method, phyre2 [], was used for predicting the protein structure. the quality […]

PMCID: 4109367
PMID: 25110714
DOI: 10.1155/2014/972692

[…] vital clues in understanding basic cell biology and further development of toxoid based therapeutics. to address the above issues, by using support vector machines (svm) and dipeptides composition, btxpred has proposed and achieved an accuracy of 96.07 and 92.50% for discriminating bacteria toxins and nontoxins, respectively. they also obtained 95.71 and 92.86% of accuracy in classifying […]

PMCID: 3765740
PMID: 23978260
DOI: 10.1186/1471-2164-14-574

[…] encode hypothetical proteins, central genes encode dna-binding proteins, and right end genes encode capsid morphogenesis and dna packaging, tail morphogenesis, and lysis proteins (figureĀ ). using btxpred analysis (to identify toxins) combined with blastp and hhpred comparisons (to identify other pathogenicity-associated proteins; tablesĀ  and ), no putative virulence modules were detected, […]

PMCID: 3705625
PMID: 23861566
DOI: 10.6026/97320630009506

[…] and essential genes was searched using cello at http://cello.life.nctu.edu.tw/ []. the bacterial toxin producing genes have been identified and classified into exotoxins and endotoxins using btxpred tool at http://www.imtech.res.in/raghava/btxpred/ [], further the proteins were subjected to interpro server 41.0 at http://www.ebi.ac.uk/interpro/ [] to extrapolate the domains, […]


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BTXpred institution(s)
Institute of Microbial Technology, Chandigarh, India

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