BubbleGUM protocols

View BubbleGUM computational protocol

BubbleGUM statistics

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Associated diseases

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BubbleGUM specifications


Unique identifier OMICS_10606
Name BubbleGUM
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes


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Publication for BubbleGUM

BubbleGUM in pipeline

PMCID: 5844691
PMID: 29488879
DOI: 10.7554/eLife.30496.036

[…] dendrogram. principal component analysis (pca) on the expression dataset was performed using the multiexperiment viewer (mev) tool and the scatter plot function in r. the genesign module of the bubblegum software () was used with the min/max method to identify lists of genes specifically expressed in cell subsets. a probe was considered specific of a given cell subset if its minimal […]

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BubbleGUM in publications

PMCID: 5910604
PMID: 29678171
DOI: 10.1186/s12944-018-0741-5

[…] proliferator-activated receptor (ppar) signaling pathway and arachidonic acid metabolism. bs15 notably facilitated the expressions of fatty acid binding protein 2 (fabp2), acyl-coa synthetase bubblegum family member 1 (acsbg1), perilipin 1 (plin1) and perilipin 2 (plin2), which were involved in ppar signaling pathway of sne chickens. besides, suppression of phospholipase a2 group iva […]

PMCID: 5827522
PMID: 29483530
DOI: 10.1038/s41467-018-03262-4

[…] no obvious effect on whisking or grooming behavior (supplementary fig. )fig. 1, to overcome the problems of delivery speed and consistency, we first selected two distinct odorants, methyl valerate (bubblegum smell) and α-pinene (pine smell), with vapor pressures high enough to continuously saturate the vapor phase, but low enough not to significantly deplete the liquid phase over time (11.2 […]

PMCID: 5717352
PMID: 29238610
DOI: 10.1038/celldisc.2017.44

[…] in the cerebral cortex [, , ]. therefore, to confirm the specificity of yfp+ cells in the cerebral cortex, we immunostained aav-injected cortical slices with an antibody to acyl-coa synthetase bubblegum family member 1 (acsbg1), a protein marker for a wider spectrum of astrocytes [, ]. yfp+ cells in the cortex were positive for acsbg1 (). in addition to adult astrocytes, mlc1-tta also […]

PMCID: 5821214
PMID: 29143824
DOI: 10.1038/nature24649

[…] read alignment to the mm10 genome and transcriptome assembly were performed using hisat2 and stringtie, respectively. differential expression was assessed with ballgown. gsea was performed with bubblegum; to assess proliferation, the following signatures were selected: whitfield_cell_cycle_literature, ishida_e2f_targets and hallmark_g2m_checkpoint. rnaseq data for naïve murine cd4+ t cells […]

PMCID: 5762844
PMID: 28984873
DOI: 10.1038/cdd.2017.157

[…] (). notably, the expression pattern of rnf20 is consistent with that of white matter astrocyte marker glial fibrillary acidic protein (gfap) and gray matter astrocyte marker acyl coa synthetase bubblegum family member 1 (acsbg1) during the cerebral cortical astrocytic differentiation (). to identify whether rnf20 is expressed in astrocyte, we performed immunostaining in vitro. results […]

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BubbleGUM institution(s)
Centre d’Immunologie, de Marseille-Luminy, Aix Marseille University UM2, Inserm, U1104, CNRS UMR7280, Marseille, France

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