BugBase specifications

Information


Unique identifier OMICS_18109
Name BugBase
Interface Web user interface
Restrictions to use None
Input data An OTU table or an image.
Input format TXT or BIOM or WGS.Basic
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Dan Knights <>

Information


Unique identifier OMICS_18109
Name BugBase
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An OTU table or an image.
Input format TXT or BIOM or WGS.
Operating system Unix/Linux, Mac OS
Programming languages R
Computer skills Advanced
Stability Stable
Requirements Ape, optparse, beeswarm, RColorBrewer, reshape2, plyr, grid, gridExtra, ggplot2, biom
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Dan Knights <>

Publication for BugBase

BugBase institution(s)
Biotechnology Institute, University of Minnesota, Minneapolis, MN, USA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA; Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA; Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USA; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA; Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, AZ, USA; Department of Ecology, Evolution, and Behavior, University of Minnesota, Saint Paul, MN, USA; Department of Computer of Science, University of California San Diego, San Diego, CA, USA; Department of Pediatrics, University of California San Diego, San Diego, CA, USA; Center for Microbiome Innovation, University of California San Diego, San Diego, CA, USA; Department of Biology, St Cloud State University, St. Cloud, MN, USA; Food Science and Nutrition, University of Minnesota, Saint Paul, MN, USA
BugBase funding source(s)
Supported by the National Institutes of Health (NIH), AI121383-01A1, and the Minnesota Partnership Grant Program, 13.28.

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