BugBase specifications

Unique identifier:
OMICS_18109
Restrictions to use:
None
Input format:
TXT or BIOM or WGS.Basic
Stability:
Stable
Interface:
Web user interface
Input data:
An OTU table or an image.
Computer skills:
Basic
Maintained:
Yes

BugBase specifications

Unique identifier:
OMICS_18109
Interface:
Command line interface
Input data:
An OTU table or an image.
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Requirements:
Ape, optparse, beeswarm, RColorBrewer, reshape2, plyr, grid, gridExtra, ggplot2, biom
Software type:
Package/Module
Restrictions to use:
None
Input format:
TXT or BIOM or WGS.
Programming languages:
R
Stability:
Stable
Maintained:
Yes

versioning

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BugBase distribution

download

BugBase support

Documentation

Maintainer

  • Dan Knights <>
  • Dan Knights <>

forum

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Credits

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Publications

Institution(s)

Biotechnology Institute, University of Minnesota, Minneapolis, MN, USA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA; Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN, USA; Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USA; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA; Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, AZ, USA; Department of Ecology, Evolution, and Behavior, University of Minnesota, Saint Paul, MN, USA; Department of Computer of Science, University of California San Diego, San Diego, CA, USA; Department of Pediatrics, University of California San Diego, San Diego, CA, USA; Center for Microbiome Innovation, University of California San Diego, San Diego, CA, USA; Department of Biology, St Cloud State University, St. Cloud, MN, USA; Food Science and Nutrition, University of Minnesota, Saint Paul, MN, USA

Funding source(s)

Supported by the National Institutes of Health (NIH), AI121383-01A1, and the Minnesota Partnership Grant Program, 13.28.

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