BugBuilder specifications

Information


Unique identifier OMICS_19155
Name BugBuilder
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Operating system Unix/Linux
Programming languages Perl
License Artistic License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline James Abbott

Publication for BugBuilder

BugBuilder citation

library_books

Genome sequence and plasmid transformation of the model high yield bacterial cellulose producer Gluconacetobacter hansenii ATCC 53582

2016
Sci Rep
PMCID: 4806288
PMID: 27010592
DOI: 10.1038/srep23635

[…] We sequenced G. hansenii ATCC 53582 to approximately 800x coverage using Illumina MiSeq 250 bp paired reads and assembled the reads using the BugBuilder pipeline (ENA submission ID PRJEB10804). We tested scaffolding using G. xylinus E25, G. hansenii ATCC 23769, and G. xylinus NBRC 3288 as reference genomes, and chose the NBRC 3288, as this […]

BugBuilder institution(s)
Bioinformatics Data Science Group, Department of Surgery and Cancer, Imperial College London, London, UK

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