Protocols

BugView specifications

Information


Unique identifier OMICS_23290
Name BugView
Software type Application/Script
Interface Graphical user interface, Application programming interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline David Leader

Additional information


An Applet version can be downloaded at http://motif.gla.ac.uk/BugView/downloads/BugViewWeb.zip

Publications for BugView

BugView citations

 (2)
call_split

Non Mycobacterial Virulence Genes in the Genome of the Emerging Pathogen Mycobacterium abscessus

2009
PLoS One
PMCID: 2694998
PMID: 19543527
DOI: 10.1371/journal.pone.0005660
call_split See protocol

[…] RILOC . The circular representations of chromosome and plasmid were generated with DNAPlotter (http://www.sanger.ac.uk/Software/Artemis/circular). The M. abscessus full-length prophage was drawn with BugView (http://www.gla.ac.uk/~dpl1n/BugView/index.html). Whole genome dotplot comparison of M. abscessus versus M. smegmatis was drawn with Gepard (http://mips.gsf.de/services/analysis/gepard). CLUST […]

library_books

Computational Biology Methods and Their Application to the Comparative Genomics of Endocellular Symbiotic Bacteria of Insects

2009
PMCID: 3055744
PMID: 19495914
DOI: 10.1007/s12575-009-9004-1

[…] o these visual representations, other programs such as GRAST mark the hits between the two genomes and represent them in a circular way []. Finally, other programs such as ACGT [], GOAL from BROP [], BugView [], and GenomeComp [] have contributed to the field of comparative genomics by linearly representing rearrangements or syntenic information by linking homologous regions between the compared g […]

BugView institution(s)
Division of Biochemistry and Molecular Biology, IBLS, Davidson Building, University of Glasgow, Glasgow, UK

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