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bUnwarpJ specifications

Information


Unique identifier OMICS_25606
Name bUnwarpJ
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data An image.
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 2.6.9
Stability Stable
Requirements
ImageJ
Maintained Yes

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bUnwarpJ in publications

 (17)
PMCID: 5886094
PMID: 29629239
DOI: 10.1167/tvst.7.2.17

[…] with all four pinhole sizes were then coarsely aligned using the “reposition” option (translation only) using software (i2kalign; dualalign llc, clifton park, ny), followed by alignment with the bunwarpj plugin in fiji (b-spline image registration)., finally, a logarithmic transformation of the grayscale was performed for better visualization of the cones. image scale was determined […]

PMCID: 5849633
PMID: 29535360
DOI: 10.1038/s41467-018-03348-z

[…] sma, fsp1) and of cd3 staining from the same tumor areas in representative tumors were further analyzed. images were first aligned by applying an elastic transformation using a fiji software plugin (bunwarpj). the plugin uses landmarks, defined by the user, and haematoxilin and eosin (h&e) staining from the different sections to compute the best correlation between images. the software next […]

PMCID: 5769580
PMID: 29122984
DOI: 10.1242/jcs.210203

[…] briefly, z-stack images of neurons expressing cd4::gfp in larvae at 48 h ael were acquired 15 min apart. maximum projections of images taken at both time points were aligned in imagej by using the bunwarpj plugin and then overlaid in metamorph. the first image (t=0) was pseudo-colored red and the second image (t=15 min) was pseudo-colored green. overlaid images were manually scored for red […]

PMCID: 5015020
PMID: 27604526
DOI: 10.1038/srep32685

[…] fiji. the cropped images were then used to analyse the deformation of vascular bundles and their fibre caps using digital image correlation software (aramis professional v8 sr1) and the fiji plugin bunwarpj for 2d image registration., the aim of performing an elastic and consistent image registration using bunwarp was to determine whether a simple 2d image registration can map deformations […]

PMCID: 5014410
PMID: 27603704
DOI: 10.1371/journal.pone.0162545

[…] resolution for proper comparison. subsequently, rigid transformation was used to align mri images over corresponding reference ct data and a non-rigid b-splines transformation algorithm using the bunwarpj plugin in imagej was applied to produce a precise match []. this tool produces a file containing the horizontal and vertical displacement values induced on each pixel of the mri images; […]


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