BURST pipeline

BURST specifications

Information


Unique identifier OMICS_23753
Name BURST
Alternative names eBURST, goeBURST
Interface Web user interface
Restrictions to use None
Input data TSV
Output data A radial diagram.
Programming languages Java
Computer skills Basic
Version 3
Stability Stable
Maintained Yes

Maintainers


  • person_outline Alexandre Francisco <>
  • person_outline Miguel Bugalho <>
  • person_outline Mario Ramirez <>
  • person_outline Joao Carriço <>

Additional information


http://eburst.mlst.net/v3/instructions/ http://www.phyloviz.net/goeburst/#Software

Information


Unique identifier OMICS_23753
Name BURST
Alternative names eBURST, goeBURST
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.2.1
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainers


  • person_outline Alexandre Francisco <>
  • person_outline Miguel Bugalho <>
  • person_outline Mario Ramirez <>
  • person_outline Joao Carriço <>

Additional information


http://eburst.mlst.net/v3/instructions/ http://www.phyloviz.net/goeburst/#Software

Publications for BURST

BURST IN pipelines

 (15)
2017
PMCID: 5242430
PMID: 28099434
DOI: 10.1371/journal.pntd.0005223

[…] patterns of evolutionary descent among genotypes according to their source and geographic region, the allelic profile of the southeastern brazilian and the global dataset were applied to the goeburst algorithm in philoviz software available at http://www.phyloviz.net/wiki/ [49]. in this analysis, differences between sts are presented as single locus variant (slv), double locus variant […]

2017
PMCID: 5400095
PMID: 28065889
DOI: 10.1093/jac/dkw559

[…] sample size (ess) was >200. posterior probabilities were calculated with a 10% burn-in and values >0.7 were considered significant. results were visualized in figtree (v. 1.40). additionally, goeburst (v 1.2.1) software was used for population structure analysis of sts.27 analysis was conducted at double- and triple-locus variant levels. single- and double-locus variants of previously […]

2015
PMCID: 4552844
PMID: 26317849
DOI: 10.1371/journal.pone.0134592

[…] isolated indicating there may be multiple reservoirs of infection on these farms (table 2)., *denotes novel st submitted to the mlst database, groups of related genotypes were identified using the eburst algorithm. the isolates in this study were compared with all entries of bovine origin in the mlst database. despite the genetic heterogeneity among the isolates, all grouped into ccs/sts (fig […]

2015
PMCID: 4552844
PMID: 26317849
DOI: 10.1371/journal.pone.0134592

[…] (n = 2) with the remaining 14 isolates belonging to st136. the predicted founders of all four ccs identified were present amongst the sts. assignment of the ancestral founder was supported by the eburst analysis with bootstrap resampling yielding values of 99%, 85% 99% and 97% for the prediction of the respective founding sts. noticeably, st71 appears to have formed a subgroup within cc97 […]

2015
PMCID: 4552844
PMID: 26317849
DOI: 10.1371/journal.pone.0134592

[…] using the mlst database (http://saureus.mlst.net/). the mlst data set was subdivided into non-overlapping groups of related sts or ccs and a founding genotype for that complex predicted using the eburst algorithm v3 [19]. related genotypes were defined as those where all members assigned to the same group share identical alleles at ≥ six of the seven loci with at least one other member […]

BURST institution(s)
Instituto de Engenharia de Sistemas e Computadores – ID em Lisboa, Lisboa, Portugal; Instituto Superior Técnico, Universidade Técnica de Lisboa, Lisboa, Portugal; Instituto de Microbiologia/Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal
BURST funding source(s)
Supported, in part, by Fundação para a Ciência e a Tecnologia (SFRH/BD/13215/2003) and, in part, by Fundação para a Ciência e a Tecnologia (PTDC/SAU-ESA/71499/2006).

BURST reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review BURST