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- person_outline Stewart Cole
Publication for BuruList
An Optimized Method for Extracting Bacterial RNA from Mouse Skin Tissue Colonized by Mycobacterium ulcerans
[…] ata were processed with Illumina Pipeline software (Casava version 1.9). All 65-bp reads were aligned against the complete genome and plasmid sequences of M. ulcerans (Agy99 strain) obtained from the Burulist database with Bowtie software, and against the mouse genome (GRCm38) obtained from the Ensembl database with STAR software. Data were normalized and analyzed in R, with the Bioconductor packa […]
Evidence for a rapid rate of molecular evolution at the hypervariable and immunogenic Mycobacterium tuberculosis PPE38 gene region
[…] List , M. bovis BCG strain Pasteur 1173P2 - BCGList , M. africanum strain GM041182 and M. microti strain OV254 - Sanger Centre , M. marinum strain M - MarinoList , M. ulcerains strain Agy99 - BuruList , M. leprae strain TN - Leproma , Gene sequence alignments were performed using the CLUSTALW multiple sequence alignment programme . […]
Impact of Mycobacterium ulcerans Biofilm on Transmissibility to Ecological Niches and Buruli Ulcer Pathogenesis
[…] ). The samples were analyzed by MALDI-MS on a Voyager DE STR (PerSeptive Biosystems, http://www.appliedbiosystems.com) equipped with a nitrogen laser (337 nm). To search the M. ulcerans ORF database “BuruList” (http://genolist.pasteur.fr/BuruList), monoisotopic masses were assigned using a local copy of the MS-Fit3.2 part of the Protein Prospector package (University of California Mass Spectrometr […]
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