bzip2 pipeline

bzip2 specifications

Information


Unique identifier OMICS_00951
Name bzip2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format BZ2
Operating system Unix/Linux
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 1.0.6
Stability Stable
Source code URL http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz
Maintained Yes

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Documentation


Maintainer


  • person_outline bzip2 Team <>

bzip2 IN pipelines

 (4)
2015
PMCID: 4455317
PMID: 26045962
DOI: 10.1186/s13742-015-0058-5

[…] copied to hadoop’s file system (hdfs) before starting the experiments. specifically, the storage volume containing the input data was mounted with sshfs to one of the hadoop nodes, from where the bzip2-compressed data was transferred to hdfs., we used a computational cluster at uppmax [28] to run the hpc analysis pipeline. data and reference genomes were stored on a parallel, shared storage […]

2015
PMCID: 4455317
PMID: 26045962
DOI: 10.1186/s13742-015-0058-5

[…] approximately 10 to 100 gb, which are referred to as datasets s1-s9. all of the data used were standardized to the fastq format and compressed with pbzip2 [27] (which is a parallel version of the bzip2) because it provides very good compression and is splittable. this means that the archive can be natively expanded by hadoop using the proper codecs in a massively parallel manner, thereby […]

2013
PMCID: 3726863
PMID: 23908661
DOI: 10.3389/fpls.2013.00286

[…] an incomplete genome sequence, the existence of additional zip genes in the bean genome is a possibility., three pv bzip genes were identified in the p. vulgaris genome based on sequences of bzip19, bzip23, and bzip24 reported by assunção et al. (2010) in arabidopsis. identification of the new bzip genes was based on the homology with the basic leucine zipper domain (bzip domain)., sequence […]

2013
PMCID: 3726863
PMID: 23908661
DOI: 10.3389/fpls.2013.00286

[…] genome sequence, the existence of additional zip genes in the bean genome is a possibility., three pv bzip genes were identified in the p. vulgaris genome based on sequences of bzip19, bzip23, and bzip24 reported by assunção et al. (2010) in arabidopsis. identification of the new bzip genes was based on the homology with the basic leucine zipper domain (bzip domain)., sequence alignments, […]

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