C-GRAAL statistics

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Citations per year

Number of citations per year for the bioinformatics software tool C-GRAAL

Tool usage distribution map

This map represents all the scientific publications referring to C-GRAAL per scientific context
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C-GRAAL specifications


Unique identifier OMICS_04889
Alternative name Common-neighbors based GRAph ALigner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for Common-neighbors based GRAph ALigner

C-GRAAL citations


GreedyPlus: An Algorithm for the Alignment of Interface Interaction Networks

Sci Rep
PMCID: 4499810
PMID: 26165520
DOI: 10.1038/srep12074

[…] s at each radius greedily. H-GRAAL, like IsoRank, formulates the global network alignment problem as a minimum-weight bipartite matching problem and solves this problem using the Hungarian algorithm. C-GRAAL uses BLAST sequence similarity in a seed-and-extend approach where nodes with high neighbourhood densities are selected as seeds, greedily aligning their neighbourhoods, and then using a commo […]


The post genomic era of biological network alignment

EURASIP J Bioinform Syst Biol
PMCID: 5270500
PMID: 28194172
DOI: 10.1186/s13637-015-0022-9

[…] ight bipartite matching problem using Hungarian algorithm []. More recent MI-GRAAL [] combines alignment strategies of GRAAL and H-GRAAL to further improve alignment quality. In parallel to MI-GRAAL, C-GRAAL [] has appeared, whose node cost function is based on the idea of shared network neighbors rather than graphlet counts. Its alignment strategy is a seed-and-extend approach.More recent and als […]


Applied Graph Mining Algorithms to Study Biomolecular Interaction Networks

Biomed Res Int
PMCID: 3996886
PMID: 24800226
DOI: 10.1155/2014/439476

[…] thm locates the assignment of all pairs of nodes that yield a minimized total cost of alignment. Additionally, there are other graphlet-based alignment algorithms including MI-GRAAL [] and the latest C-GRAAL []. Like GRAAL, MI-GRAAL is a seed-and-extend approach. However, unlike GRAAL and H-GRAAL, which are purely based on topological information, MI-GRAAL can integrate any type of similarity meas […]

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C-GRAAL institution(s)
Department of Computer Science, University of California, Irvine, Irvine, CA, USA

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