C-Hunter statistics

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C-Hunter specifications

Information


Unique identifier OMICS_17102
Name C-Hunter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Advanced
Version 1.0
Stability No
Source code URL https://web.archive.org/web/20100626045648/http://fcg.tamu.edu/C_Hunter/download_C_Hunter.tar.gz.php
Maintained No

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Publication for C-Hunter

C-Hunter in publications

 (6)
PMCID: 5682003
PMID: 29163445
DOI: 10.3389/fmicb.2017.02166

[…] data on experimentally identified gene clusters. thus, these methods are unsuitable for the prediction of putrefaction pathways under study. further, unlike the above mentioned methods, although c-hunter algorithm can be applied for prediction of any pathway, it depends on the functional annotation of genes (like go annotation) corresponding to the pathway of interest (). in contrast, […]

PMCID: 3908651
PMID: 24564620
DOI: 10.1186/1471-2105-14-S15-S14

[…]  r-windows [-], segmental homologies (k -clumps) [], and max-gap clusters [-]. other methods solve the problem of assigning significance to predicted gene clusters in an ad-hoc manner, including c-hunter [], orthocluster [], mcmusec [], cyntenator [], and i-adhore []. in this paper we consider the gene cluster model of approximate common intervals []. this can be easily applied to a variety […]

PMCID: 3491373
PMID: 22925495
DOI: 10.1186/gb-2012-13-8-r74

[…] gene expression, photosynthesis and protein transport (figure s8 in additional file ; table s3 in additional file ). to identify genomic features that are specific for the boc1 region, the c-hunter tool (see materials and methods) was applied to detect significant physical clustering of highly expressed genes and intron-containing genes on the different chromosomes (table s4 […]

PMCID: 3149037
PMID: 21829596
DOI: 10.1371/journal.pone.0020988

[…] and coordinators: albany medical college: s factor, d higgins, s evans; barrow neurological institute: h shill, m stacy, j danielson, l marlor, k williamson; baylor college of medicine: j jankovic, c hunter; beth israel deaconess medical center: d simon, p ryan, l scollins; beth israel medical center: r saunders-pullman, k boyar, c costan-toth, e ohmann; brigham & women's hospital: l […]

PMCID: 2858137
PMID: 20356410
DOI: 10.1186/1471-2350-11-53

[…] banner good samaritan medical center: p mahant, e karoll; barrow neurological institute: a lieberman, h shill, m stacy, j danielson, l marlor, k williamson; baylor college of medicine: j jankovic, c hunter; beth israel deaconess medical center: d simon, p rose, p ryan, l scollins; beth israel medical center: r saunders-pullman, k boyar, c costan-toth, e ohmann; brigham & women's hospital: […]


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C-Hunter institution(s)
Department of Computer Science, Texas A&M University, College Station, TX, USA; Department of Biochemistry & Biophysics, Texas A&M University, College Station, TX, USA; Department of Plant Pathology & Microbiology, Texas A&M University, College Station, TX, USA
C-Hunter funding source(s)
Supported by funds from the Texas Agricultural Experiment Station and by the National Science Foundation under grants CCR-0311590 and DBI-0421815.

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