C-Hunter

[…] data on experimentally identified gene clusters. thus, these methods are unsuitable for the prediction of putrefaction pathways under study. further, unlike the above mentioned methods, although c-hunter algorithm can be applied for prediction of any pathway, it depends on the functional annotation of genes (like go annotation) corresponding to the pathway of interest (). in contrast, […]

[…]  r-windows [-], segmental homologies (k -clumps) [], and max-gap clusters [-]. other methods solve the problem of assigning significance to predicted gene clusters in an ad-hoc manner, including c-hunter [], orthocluster [], mcmusec [], cyntenator [], and i-adhore []. in this paper we consider the gene cluster model of approximate common intervals []. this can be easily applied to a variety […]

[…] gene expression, photosynthesis and protein transport (figure s8 in additional file ; table s3 in additional file ). to identify genomic features that are specific for the boc1 region, the c-hunter tool (see materials and methods) was applied to detect significant physical clustering of highly expressed genes and intron-containing genes on the different chromosomes (table s4 […]

[…] and coordinators: albany medical college: s factor, d higgins, s evans; barrow neurological institute: h shill, m stacy, j danielson, l marlor, k williamson; baylor college of medicine: j jankovic, c hunter; beth israel deaconess medical center: d simon, p ryan, l scollins; beth israel medical center: r saunders-pullman, k boyar, c costan-toth, e ohmann; brigham & women's hospital: l […]

[…] banner good samaritan medical center: p mahant, e karoll; barrow neurological institute: a lieberman, h shill, m stacy, j danielson, l marlor, k williamson; baylor college of medicine: j jankovic, c hunter; beth israel deaconess medical center: d simon, p rose, p ryan, l scollins; beth israel medical center: r saunders-pullman, k boyar, c costan-toth, e ohmann; brigham & women's hospital: […]