C-Hunter statistics
C-Hunter specifications
Information
Unique identifier | OMICS_17102 |
---|---|
Name | C-Hunter |
Software type | Package/Module |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux, Windows |
Computer skills | Advanced |
Version | 1.0 |
Stability | No |
Source code URL | https://web.archive.org/web/20100626045648/http://fcg.tamu.edu/C_Hunter/download_C_Hunter.tar.gz.php |
Maintained | No |
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C-Hunter in publications
(6)In Silico Analysis of Putrefaction Pathways in Bacteria and Its Implication in Colorectal Cancer
[…] data on experimentally identified gene clusters. thus, these methods are unsuitable for the prediction of putrefaction pathways under study. further, unlike the above mentioned methods, although c-hunter algorithm can be applied for prediction of any pathway, it depends on the functional annotation of genes (like go annotation) corresponding to the pathway of interest (). in contrast, […]
Statistics for approximate gene clusters
[…] r-windows [-], segmental homologies (k -clumps) [], and max-gap clusters [-]. other methods solve the problem of assigning significance to predicted gene clusters in an ad-hoc manner, including c-hunter [], orthocluster [], mcmusec [], cyntenator [], and i-adhore []. in this paper we consider the gene cluster model of approximate common intervals []. this can be easily applied to a variety […]
[…] gene expression, photosynthesis and protein transport (figure s8 in additional file ; table s3 in additional file ). to identify genomic features that are specific for the boc1 region, the c-hunter tool (see materials and methods) was applied to detect significant physical clustering of highly expressed genes and intron-containing genes on the different chromosomes (table s4 […]
Copy Number Variation in Familial Parkinson Disease
[…] and coordinators: albany medical college: s factor, d higgins, s evans; barrow neurological institute: h shill, m stacy, j danielson, l marlor, k williamson; baylor college of medicine: j jankovic, c hunter; beth israel deaconess medical center: d simon, p ryan, l scollins; beth israel medical center: r saunders-pullman, k boyar, c costan-toth, e ohmann; brigham & women's hospital: l […]
[…] banner good samaritan medical center: p mahant, e karoll; barrow neurological institute: a lieberman, h shill, m stacy, j danielson, l marlor, k williamson; baylor college of medicine: j jankovic, c hunter; beth israel deaconess medical center: d simon, p rose, p ryan, l scollins; beth israel medical center: r saunders-pullman, k boyar, c costan-toth, e ohmann; brigham & women's hospital: […]
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