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C-Hunter specifications

Information


Unique identifier OMICS_17102
Name C-Hunter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Advanced
Version 1.0
Stability No
Source code URL https://web.archive.org/web/20100626045648/http://fcg.tamu.edu/C_Hunter/download_C_Hunter.tar.gz.php
Maintained No

Versioning


No version available

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This tool is not available anymore.

Publication for C-Hunter

C-Hunter citations

 (17)
library_books

In Silico Analysis of Putrefaction Pathways in Bacteria and Its Implication in Colorectal Cancer

2017
Front Microbiol
PMCID: 5682003
PMID: 29163445
DOI: 10.3389/fmicb.2017.02166

[…] tial data on experimentally identified gene clusters. Thus, these methods are unsuitable for the prediction of putrefaction pathways under study. Further, unlike the above mentioned methods, although C-Hunter algorithm can be applied for prediction of any pathway, it depends on the functional annotation of genes (like GO annotation) corresponding to the pathway of interest (). In contrast, the pre […]

library_books

Taxonomic revision and cladistic analysis of Avicularia Lamarck, 1818 (Araneae, Theraphosidae, Aviculariinae) with description of three new aviculariine genera

2017
Zookeys
PMCID: 5345366
PMID: 28331414
DOI: 10.3897/zookeys.659.10717

[…] emale, 21 March 2006 (UA 041/2006); 1 male (UA 005/2005); 1 male (UA 002/2005); Puerto Maldonado [12°36'S, 69°41'W], 15 km East, Rio Madre de Dios, Albergue Lodge Cuzco Amazônico, 200 m, 1 female, G. C. Hunter col, 8 June 1983 (CAS10); La Cachuela (12°33'S, 69°11'W), 1 male and 2 females, H.–W. Auer col., September–October 2013 (MUSM–ENT 0506819); Tambopata [12°34'S, 69°11'W], 1 female, R. Bennett […]

library_books

Meta‐analysis of individual‐patient data from EVAR‐1, DREAM, OVER and ACE trials comparing outcomes of endovascular or open repair for abdominal aortic aneurysm over 5 years

2017
PMCID: 5299468
PMID: 28160528
DOI: 10.1002/bjs.10430

[…] T. S. Hatsukami, D. G. Glickerman, M. Sobel, T. S. Burdick, K. Pedersen, P. Cleary (Seattle, Washington); M. Back, D. Bandyk, B. Johnson, M. Shames, R. L. Reinhard, S. C. Thomas (Tampa, Florida); G. C. Hunter, L. R. Leon Jr, A. Westerband, R. J. Guerra, M. Riveros, J. L. Mills Sr, J. D. Hughes, A. M. Escalante, S. B. Psalms, N. N. Day (Tucson, Arizona); R. Macsata, A. Sidawy, J. Weiswasser, S. Ar […]

library_books

Coxiella burnetii dormancy in a fatal ten year multisystem dysfunctional illness: case report

2016
BMC Infect Dis
PMCID: 4835832
PMID: 27091026
DOI: 10.1186/s12879-016-1497-z

[…] The authors are grateful to Mrs C. Hunter and Alison Hunter Memorial Foundation in Partnership with the National Centre for Neuroimmunology and Emerging Diseases (NCNED), Griffith University, Queensland, Australia for generous finan […]

library_books

The Records of Stannington Children’s Sanatorium: Charting Half a Century of Tuberculosis Care

2016
PMCID: 5146685
PMID: 27956759
DOI: 10.1093/shm/hkw027

[…] facilities and success stories. is one page from this brochure and, whilst the case in question predates the extant patient files, the case was reported at the time by the Medical Superintendent Dr T.C. Hunter in The Lancet; a good example of how contemporary published sources can often support the archival record, although the lack of representativeness of published cases must be considered. The […]

library_books

Statistics for approximate gene clusters

2013
BMC Bioinformatics
PMCID: 3908651
PMID: 24564620
DOI: 10.1186/1471-2105-14-S15-S14

[…] ular  r-windows [-], segmental homologies (k -clumps) [], and max-gap clusters [-]. Other methods solve the problem of assigning significance to predicted gene clusters in an ad-hoc manner, including C-Hunter [], OrthoCluster [], MCMuSeC [], CYNTENATOR [], and i-ADHoRe []. In this paper we consider the gene cluster model of approximate common intervals []. This can be easily applied to a variety o […]


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C-Hunter institution(s)
Department of Computer Science, Texas A&M University, College Station, TX, USA; Department of Biochemistry & Biophysics, Texas A&M University, College Station, TX, USA; Department of Plant Pathology & Microbiology, Texas A&M University, College Station, TX, USA
C-Hunter funding source(s)
Supported by funds from the Texas Agricultural Experiment Station and by the National Science Foundation under grants CCR-0311590 and DBI-0421815.

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