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C-It specifications


Unique identifier OMICS_19538
Name C-It
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Vertebrates
    • Danio rerio
    • Gallus gallus


  • person_outline Thomas Braun
  • person_outline Shizuka Uchida

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Publication for C-It

C-It citations


hmmIBD: software to infer pairwise identity by descent between haploid genotypes

Malar J
PMCID: 5952413
PMID: 29764422
DOI: 10.1186/s12936-018-2349-7

[…] he user; if not supplied, the program estimates them from the data. The model accommodates positions with missing data by omitting emission probabilities at those sites. The program is implemented in C; it complies with the C11 standard and requires no additional libraries. It can accept genotype data for any variant that can be represented by an integer at a single position on the chromosome (e.g […]


Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics

Nat Commun
PMCID: 5940825
PMID: 29739930
DOI: 10.1038/s41467-018-03621-1

[…] have high colocalization probabilities. See Supplementary Tables , , and 5. However, visceral fat association shows evidence of non colocalization (probability of independent signals P3 = 0.69 in LDL-C). It is possible that the relevant regulatory activity in visceral adipose tissue was not detected in the GTEx samples for various reasons but it was detected in tibial nerve. Thus by looking into a […]


Quantification of HLA DM Dependent Major Histocompatibility Complex of Class II Immunopeptidomes by the Peptide Landscape Antigenic Epitope Alignment Utility

Front Immunol
PMCID: 5943503
PMID: 29774024
DOI: 10.3389/fimmu.2018.00872

[…] ted with membranes (primarily the plasma membrane), while increase the protein sources annotated in organelles including the Golgi apparatus, endoplasmic reticulum, and endosomal compartments (Figure C). It is worth noting that such a trend is more evident at the peptide level, where increased DM expression results in a complete removal of the “membrane” GO term. At the epitope level, on the other […]


A New Synthesis Approach for Carbon Nitrides: Poly(triazine imide) and Its Photocatalytic Properties

PMCID: 5928491
PMID: 29732448
DOI: 10.1021/acsomega.8b00294

[…] sult by the stacking of the PTI planes in solid state. Also, solvent interaction has to be reconsidered. The 15N NMR spectrum of PTI was collected in a heteronuclear multiband correlation experiment (c). It consists of three signals at −212.4, −249.5, and −296.8 ppm. The first signal is assigned to the tertiary nitrogen atom in the outer ring of triazine or heptazine units in accordance to the lit […]


A New FPGA Architecture of FAST and BRIEF Algorithm for On Board Corner Detection and Matching

PMCID: 5948726
PMID: 29597331
DOI: 10.3390/s18041014

[…] tations with different textures are presented in . As seen from , the red curve and black curve represent the FPGA’s and the PC’s, respectively. When 1-precision = 0, the value of recall is equal to “c.” It means there are “100*c” correctly point pairs and “0” falsely point pairs, because the maximum number of point pairs is 100 (namely, N1 + N3 = 100). The 1-precision stops at some value “f,” it […]


Long Non coding MIR205HG Depletes Hsa miR 590 3p Leading to Unrestrained Proliferation in Head and Neck Squamous Cell Carcinoma

PMCID: 5858504
PMID: 29556360
DOI: 10.7150/thno.22167

[…] histone H4 (Figure F), which were significantly decreased following mutant p53 depletion. Accordingly, miR-205-5p and MIR205HG expressions were significantly reduced in si-p53 CAL27 cells (Figure B, C).It has previously been shown that wild-type p53 binds to the region in the third intron immediately upstream of miR-205-5p (Figure D) . Indeed, a consensus site for wt-p53 is present in this intron […]

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C-It institution(s)
Max-Planck-Institute for Heart and Lung Research, Bad Nauheim, Germany
C-It funding source(s)
Supported Start-up-grant of the Excellence Cluster Cardio-Pulmonary System (ECCPS); a fellowship of the International Max Planck Research School for Heart and Lung Research (IMPRS-HLR); the Max Planck Society, the DFG (Br1416); the EU Commission (MYORES network of excellence); the Kerckhoff-Foundation and the Excellence Initiative ‘Cardiopulmonary System’.

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