Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Sep 8 2014
Last update date: Oct 24 2018
Access: Public
Diseases: Deficiency Diseases, Muscular Atrophy, Spinal, Spinal Muscular Atrophies of Childhood, Motor Neuron Disease
Genes: SMN1, TAF65p, SNG2, K20, fz5, Grm7
Computational protocol: FastQC, cutadapt, TopHat, Cufflinks, CummeRbund, IPA
Dataset link Transcriptome profiling of severe spinal muscular atrophy mouse embryonic stem cell-derived motor neurons

Experimental Protocol


RNA profiles were generated from FACS-purified control and SMA mESC-derived motor neurons (n=3/genotype) by deep sequencing using Illumina HighSeq 2500

Repositories


GEO

GSE56284

ArrayExpress

E-GEOD-56284

ENA

SRP040645

BioProject

PRJNA242839

Download


Contact


Matthew Butchbach
Matthew E R Butchbach

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