Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 236
Release date: Mar 27 2017
Last update date: Oct 24 2018
Access: Public
Genes: SOX3, POU5F1, GATA6
Taxon: Mus musculus
Dataset link Single-cell analysis reveals lineage segregation and pluripotency state transition in early post-implantation mouse embryos

Experimental Protocol


Examination of 108 EPI cells, 8 VE cells and 8 EXE cells from 3 pregastrulation embryos (E5.5 and early-stage E6.5), and 112 cells from 3 early gastrulation embryos (late-stage E6.5). The lineages of cells were determined by Pricipal component analysis or diffusion map analysis using expression data of all genes or known markers.

Repositories


GEO

GSE70713

ENA

SRP060633

BioProject

PRJNA289416

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Contact


Ying Jin