C2S specifications

Information


Unique identifier OMICS_09374
Name C2S
Alternative name Contact Map-to-Structure
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data contact map file (.cmap) and FASTA file (.fasta)
Output data A full-atom 3D structure of a protein
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Bogumil M. Konopka

Information


Unique identifier OMICS_09374
Name C2S
Alternative name Contact Map-to-Structure
Interface Web user interface
Restrictions to use None
Input data contact map file (.cmap) and FASTA file (.fasta)
Output data A full-atom 3D structure of a protein
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Bogumil M. Konopka

Publication for Contact Map-to-Structure

C2S citation

library_books

Applying PyRosetta molecular energies to separate properly oriented protein models from mirror models, obtained from contact maps

2016
J Mol Model
PMCID: 4842210
PMID: 27107578
DOI: 10.1007/s00894-016-2975-3

[…] n since their mirror images and properly oriented structures are easily distinguishable by visual inspection, through the handedness of their helices. Next, the contact maps were used as an input for C2S_pipeline [] to reconstruct structural models. For each selected domain, 50 models were generated, and their RMSD distributions investigated. Domains for which the histograms showed two non-overlap […]

C2S institution(s)
Institute of Biomedical Engineering and Instrumentation, Wroclaw University of Technology, Wybrzeze Wyspianskiego, Wroclaw, Poland

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