Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 7
Release date: Feb 20 2010
Last update date: Mar 22 2012
Access: Public
Taxon: Phytophthora parasitica
Dataset link Global gene expression of Poncirus trifoliata, Citrus sunki and their hybrids under infection of Phytophthora parasitica

Experimental Protocol


A total of 62,876 unigenes (18,712 unigenes of Citrus sinensis; 31,583 unigenes of Citrus reticulata and 12,581 unigenes of Poncirus trifoliate) selected from CitEST database assembled from the EST submitted to NCBI (Genebank accession number EY649559 to EY842485) were used to construct genome-wide oligonucleotide cDNA microarrays by Roche NimbleGen Systems using a multi-step approach to select probes with optimal predicted hybridization characteristics. Three probes were selected per unigene, comprising a probe set, and each probe set is represented on the final array by two replicates. All probes were designed as ‘‘perfect match’’ (PM) oligonucleotides (oligos).

Repositories


GEO

GSE20412

ArrayExpress

E-GEOD-20412

BioProject

PRJNA125433

Download


Contact


Leonardo Boava
Leonardo Pires Boava