C3NET pipeline

C3NET specifications


Unique identifier OMICS_01681
Name C3NET
Alternative name Ac3net
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2.2
Stability Stable
Source code URL https://cran.r-project.org/src/contrib/Ac3net_1.2.2.tar.gz
Maintained Yes



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  • person_outline Gokmen Altay <>

Additional information

https://cran.r-project.org/web/packages/c3net/index.html https://github.com/cran/c3net

Publications for C3NET

C3NET IN pipeline

PMCID: 4181829
PMID: 25279447
DOI: 10.1186/s12918-014-0111-5

[…] to identify interactions appearing only under a subset of conditions [17–19]. for example, such an approach was used to analyse prostate cancer datasets by comparing the networks inferred using c3net from normal or tumour samples datasets and was able to successfully identify cancer specific interactions [20]. here, we construct and analyse co-expression networks extracted […]

C3NET institution(s)
La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA
C3NET funding source(s)
Supported by National Institute of Allergy and Infectious Diseases (NIAID) of the National Institutes of Health (NIH) under award number: R24AI108564.

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