Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 10
Release date: Jul 15 2012
Last update date: Aug 23 2018
Access: Public
Taxon: Mus musculus
Dataset link DNA methylation dynamics during in vivo differentiation of blood and skin stem cells

Experimental Protocol


We used microarray data to compare the gene expression profiles between various purified cell populations of the blood and skin lineages. Microarray data were obtained for 13 blood cell types (HSC, MPP1, MPP2, CLP, CMP, MEP, GMP, CD4, CD8, B-cell, Eryth, Granu, Mono) and 6 skin cell types (TBSC, ABSC, MTAC, CLDC, EPro, EDif). A subset of these microarray profiles have already been uploaded to GEO as part of previous research and were reused for the current study (GSE20244: MPP1, MPP2, CLP, CMP, GMP; GSE6506: CD4, CD8, B-cell, Eryth, Granu, Mono; GSE31028: TBSC, ABSC, MTAC). All microarray profiles that had not been made public previously are included here (HSC, MEP, CLDC, EPro, EDif). Furthermore, all data are available for download from the paper's supplementary website (http://invivomethylation.computational-epigenetics.org/). This submission includes the gene expression component of the study. The complete dataset representing the GSE38557 Samples, and the GSE20244, GSE6506, and GSE31028 Samples listed above, is linked below as a supplementary file.

Repositories


GEO

GSE38557

ArrayExpress

E-GEOD-38557

BioProject

PRJNA168152

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Contact


Christoph Bock