Dataset features

Specifications


Application: SNP array data analysis
Number of samples: 31
Release date: Jun 13 2011
Last update date: Nov 27 2018
Access: Public
Diseases: Breast Diseases, Breast Neoplasms, Neoplasms
Dataset link Assessment of palindromes as platforms for DNA amplification in breast cancer

Experimental Protocol


DNA palindrome profiles generated using the Genome-wide Analysis of Palindrome Formation (GAPF) assay. Whole genome profiling was performed on Colo320DM vs HF and MCF7 vs HF. Prolifing of chromosomes 8, 11, and 12 was performed on BT474 vs PBL, MCF7 vs PBL, MDA231 vs PBL, UACC893 vs PBL and 4 primary invasive ductal carcinomas (IDCs) vs PBL. Copy-number analysis on SNP 6.0 arrays was performed on Colo320DM and the 4 primary IDCs. The CEL files for the 4 breast cancer cell lines were obtained from the Wellcome Trust Sanger Institute Cancer Genome Project web site (http://www.sanger.ac.uk/genetics/CGP). All SNP arrays were compared to the HapMap cellection reference.

Repositories


GEO

GSE29876

BioProject

PRJNA140993

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Contact


Jamie Guenthoer