Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 14
Release date: Apr 25 2016
Last update date: Jun 2 2016
Access: Public
Genes: CTNNB1, WNT8A
Computational protocol: GSNAP, HTSeq, DESeq2
Dataset link Tissue- and stage-specific cellular context regulates Wnt target gene expression subsequent to β-catenin recruitment

Experimental Protocol


For ChIP-seq, one ChIP DNA and one input control DNA samples pooled from three independent ChIP experiments using early gastrula embryos were sequenced. For RNA-seq, Twelve total RNA samples (triplicates of each experimental samples: uninjected, CoMO-injected, wnt8aMO-injected, wnt8aMO and pCSKA-wnt8a-coinjected) from early gastrula embryos were sequenced.

Repositories


GEO

GSE72657

ENA

SRP063109

BioProject

PRJNA294599

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