Dataset features

Specifications


Application: SNP array data analysis
Number of samples: 200
Release date: Oct 1 2015
Last update date: Nov 23 2015
Access: Public
Diseases: Neoplasms, Ovarian Neoplasms
Dataset link The tumor heterogeneity of high grade serous ovarian cancer identified by stem cloning technique (Illumina SNP array)

Experimental Protocol


We have used surgery samples of high grade serous ovarian cancer and cultured cancer cell colony on 3T3 feeder layer. We used Illumina OmniExpress SNP array to genotype samples from normal fimbria (fimbria clones), cancer clones (N clones), passaging cancer clones (NP clones) and drug resistant cancer clones (TR clones). Fimbria, N and NP clones were cloned from original pooled culture of normal fimbria and ovarian cancer cells. TR clones were cloned from Taxol-treated (four times) ovarian cancer cells. All clones are from two patients and those from patient 2 are called CP30-N clones.

Repositories


GEO

GSE65254

BioProject

PRJNA273762

Download


Contact


Frank McKeon