Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 14
Release date: Feb 7 2013
Last update date: Jan 24 2018
Access: Public
Chemicals: 5-Methylcytosine
Dataset link TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS

Experimental Protocol


ChIP-Seq experiments were performed on Illumina HiScanSQ sequencer in wild-type HEK293T cells for H3K4me3 histone marks, O-GlcNAc and HCF1, for HT-TET2, HT-TET3 and HT-OGT in HEK293T cells overexpressing those three fusion proteins and in TET2 Kd HEK293T cells for H3K4me3 histone marks. ChIP-Seqs were also performed in mouse bone marrow tissues for H3K4me3 histone marks, O-GlcNAc, endogenous Tet2 and in Tet2 Ko bone marrow tissues for H3K4me3 histone marks.

Repositories


GEO

GSE36620

ArrayExpress

E-GEOD-36620

ENA

SRP011587

BioProject

PRJNA153707

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