Dataset features

Specifications


Dataset type: Expression profiling by high throughput sequencing
Number of samples: 20
Release date: Feb 15 2019
Last update date: Feb 16 2019
Access: Public
Dataset link Longitudinal transcriptome profiling of post-treatment Lyme disease syndrome

Experimental Protocol


Gene expression profile from peripheral mononuclear blood cells (PBMC) of PTLDS patients was undertaken. Seven Lyme disease patients were sampled at 3 time points: acute Lyme pre-treatment (V1), 3 weeks later, immediately following completion of a standard course of antibiotics (V2), and 6 months following treatment completion (V5). Total RNA was extracted from 10e7 PBMC, followed by mRNA purification, paired-end barcode library preparation and sequencing on an Illumina HiSeq 2000.

Repositories


GEO

GSE77929

ENA

SRP070649

BioProject

PRJNA312122

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Contact


Charles Chiu