Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 2
Release date: Sep 22 2010
Last update date: May 23 2013
Access: Public
Genes: GGPS1
Taxon: Citrus sinensis
Dataset link Discovery and comparative profiling of microRNAs in sweet oranges

Experimental Protocol


Size fractionated small RNAs (16-30 bp) from total RNA extracts was ligated to 5' and 3' adapters, and reverse transcribed. After PCR amplification the sample was subjected to Solexa sequencing. The resultant 35nt sequence data were filtered according to base quality value. The remained sequences were used to trim 5' and 3' adaptors. The clean tags were used for further analysis.

Repositories


GEO

GSE18207

ArrayExpress

E-GEOD-18207

ENA

SRP002305

BioProject

PRJNA119571

Download


Contact


Qiang Xu