Computational protocol: Microbial culturomics unravels the halophilic microbiota repertoire of table salt: description of Gracilibacillus massiliensis sp. nov.

Similar protocols

Protocol publication

[…] We performed a phylogenetic analysis based on 16S rRNA of our isolate to identify its phylogenetic affiliations with other isolates of the genus Gracilibacillus. Sequences were aligned using Muscle software () and phylogenetic inferences were obtained using the approximately maximum likelihood method within the FastTree software (). Numbers at the nodes are support local values computed through the Shimodaira–Hasegawa test (). […]

Pipeline specifications

Software tools MUSCLE, FastTree
Applications Phylogenetics, Nucleotide sequence alignment
Organisms Homo sapiens