Computational protocol: Muscle cell identity requires Pax7-mediated lineage-specific DNA demethylation

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[…] All genomic representations containing reference genes, CpG islands and ChIP-seq data were integrated, explored and visualized using the Integrative Genomics Viewer []. All ChIP-seq data, with the exception of the H3K27Ac and p300 data from proliferating and differentiated C2C12 (MB and MT) [], were generated by the ENCODE Project Consortium []. GEO accession numbers are listed in Additional file . Sodium bisulphite sequencing data and Kruskal-Wallis test of sodium bisulphite data were done with the Methylation Plotter web tool []. Supporting data containing the individual gene expression values are shown in Additional file . […]

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