Dataset features

Specifications


Application: SNP array data analysis
Number of samples: 156
Release date: Nov 26 2009
Last update date: Mar 21 2012
Access: Public
Chemicals: Nucleotides
Dataset link Comparative Genomics Study of Clostridium botulinum

Experimental Protocol


One hundred fifty six query strains were investigated in this study, with each query strain hybridized against the reference strain, ATCC3502. Each strain has a single dye experiment. Each oligo is spotted on the C. botulinum species microarray once. Positive controls on the array consist of oligos designed from the sequenced reference genome, ATCC3502, and negative controls on the array consist of oligos designed from the thale cress plant, Arabidopsis thaliana.The microarrays also had Agilent internal controls.

Repositories


GEO

GSE19107

BioProject

PRJNA120457

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Contact


Chun-Hua Wan