CAARS specifications

Information


Unique identifier OMICS_32996
Name CAARS
Alternative name Comparative Assembly and Annotation of RNA-Seq data
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some data from three types of species: the species whose transcriptomes need to be assembled, which we call target species; the species with transcriptomes serving as guide for assembly and annotation, which we call guide species; and the species with already assembled transcriptomes because they improve the resolution of the gene trees in the pipeline, which we call helper species.
Operating system Unix/Linux
Programming languages Perl, Python, Shell (Bash)
License CeCILL version 2.1
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Carine Rey

Publication for Comparative Assembly and Annotation of RNA-Seq data

CAARS institution(s)
UnivLyon, ENS de Lyon, Université Claude Bernard, CNRS UMR 5239, INSERM U1210, Laboratoire de Biologie et Modélisation de la Cellule, Lyon, France; Laboratoire de Biométrie et Biologie Évolutive (LBBE), Université de Lyon, Université Lyon 1, CNRS, Villeurbanne, France
CAARS funding source(s)
Supported by the Convergenomix project (ANR-15-CE32-0005).

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