CABS-fold statistics

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CABS-fold specifications

Information


Unique identifier OMICS_10820
Name CABS-fold
Interface Web user interface
Restrictions to use None
Output data The web server output is a coarse-grained trajectory of generated conformations, its Jmol representation and predicted models in all-atom resolution (together with accompanying analysis).
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Andrzej Kolinski

Publications for CABS-fold

CABS-fold citations

 (3)
library_books

Mitochondrial DNA Mutations Associated with Type 2 Diabetes Mellitus in Chinese Uyghur Population

2017
Sci Rep
PMCID: 5717000
PMID: 29208909
DOI: 10.1038/s41598-017-17086-7

[…] We used CABS-fold server to predict the 3D structure of MT-ATP8 protein, due to lack of available X-ray 3D structure of human MT-ATP8 molecule. Afterwards, we used SWISS-Pdbviewer (version 4.10) to analyze mu […]

library_books

Protein interaction evolution from promiscuity to specificity with reduced flexibility in an increasingly complex network

2017
Sci Rep
PMCID: 5364480
PMID: 28337996
DOI: 10.1038/srep44948

[…] insertion is apparently essential for dimerization as well. Interestingly, it was the most prominent feature that distinguishes SVP from its ancestor pSVP24. De novo modeling using servers Quark and CABS-fold predicted an α-helix structure for this insertion (). Since the main interaction interfaces in MADS-domain proteins are between α-helices, we can argue that the major gain of interactions ob […]

library_books

Computational methods in drug discovery

2016
Beilstein J Org Chem
PMCID: 5238551
PMID: 28144341
DOI: 10.3762/bjoc.12.267

[…] Nuclear Overhauser Effect (NOE) data and chemical shifts have been used in combination with Rosetta ab initio structure prediction to obtain better protein structure predictions []. Freely available CABS-FOLD uses a reduced representation approach and lets the user provide experimental distant restraints in ab initio structure prediction []. This method was successful when tested in CASP6 for tar […]

Citations

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CABS-fold institution(s)
Faculty of Chemistry, University of Warsaw, Warszawa, Poland
CABS-fold funding source(s)
Supported by the National Science Center grant [MAESTRO 2014/14/A/ST6/0008] and by the Foundation for Polish Science TEAM project (TEAM/2011-7/6) co-financed by the EU European Regional Development Fund operated within the Innovative Economy Operational Program.

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