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Cache ASsisted Hash Search with Xor logic CASHX

Can be used to parse, map, quantify and manage large quantities of sequence data. CASHX is a set of tools that can be used together, or as independent modules on their own. The reference genome alignment tools can be used with any reference sequence in fasta format. The pipeline was designed and tested using Arabidopsis thaliana small RNA reads generated using an Illumina 1G.

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CASHX classification

CASHX specifications

Software type:
Restrictions to use:
Programming languages:
C++, Perl
Command line interface
Operating system:
Computer skills:

CASHX distribution


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CASHX support


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Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, USA; Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA

Funding source(s)

NSF (MCB-0618433); NIH (AI43288); USDA-NRI (2006-35301-17420); a postdoctoral fellowship from the Damon Runyun Cancer Fund

Link to literature

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