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CADB specifications

Information


Unique identifier OMICS_28622
Name CADB
Alternative name Conformation Angles DataBase
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Version 3.0
Maintained Yes

Maintainer


  • person_outline K. Sekar

Publications for Conformation Angles DataBase

CADB citations

 (4)
library_books

Non canonical activation of OmpR drives acid and osmotic stress responses in single bacterial cells

2017
Nat Commun
PMCID: 5686162
PMID: 29138484
DOI: 10.1038/s41467-017-02030-0

[…] Seven hundred base pair regions from ompC (−607 to +93 bp), cadB (−673 to +27 bp), and yghA (−673 to +27 bp) were gel-purified using the QIAquick Gel Extraction Kit (Qiagen). A glutaraldehyde-modified mica surface was prepared as described. Ten nanogram of the […]

library_books

Structural insights into the Escherichia coli lysine decarboxylases and molecular determinants of interaction with the AAA+ ATPase RavA

2016
Sci Rep
PMCID: 4832331
PMID: 27080013
DOI: 10.1038/srep24601

[…] nes share more than 65% identity. To verify annotation of these genes, we compared their genetic environment with that of E. coli ldcI and ldcC. Indeed, in E. coli the ldcI gene is in operon with the cadB gene encoding a lysine-cadaverine antiporter, whereas the ldcC gene is present between the accA gene (encoding an acetyl-CoA carboxylase alpha subunit carboxyltransferase) and the yaeR gene (codi […]

library_books

Coxiella burnetii and Leishmania mexicana residing within similar parasitophorous vacuoles elicit disparate host responses

2015
Front Microbiol
PMCID: 4528172
PMID: 26300862
DOI: 10.3389/fmicb.2015.00794

[…] ngth (>50 bp) using Trimmomatic v0.30 (). Homo sapiens reads were filtered for possible contamination by mapping to C. burnetii genome (NC_002971.3) using BWA MEM v0.7.5 () and L. mexicana genome (NZ_CADB00000000.1) using Tophat v2.0.11 (). Final clean reads were mapped to H. sapiens Genome Reference Consortium Human Build 37 (GCF_000001405.13) using CLC Genomic Workbench v6.5. To identify differe […]

library_books

Novel Insight into the Genetic Context of the cadAB Genes from a 4 chloro 2 methylphenoxyacetic Acid Degrading Sphingomonas

2013
PLoS One
PMCID: 3877037
PMID: 24391756
DOI: 10.1371/journal.pone.0083346

[…] accession no. AB353895.1) and contains ORFs 95–98, which are annotated to encode pyridine nucleotide-disulphide oxidoreductase, large subunit of 2,4-D oxygenase CadA, small subunit of 2,4-D oxygenase CadB, and putative 2-hydroxybenzoate 5-hydroxylase ferredoxin CadC, respectively. Between the gene clusters, ORFs 93 and 94 encode transcriptional regulator CadR and a putative TonB-dependent receptor […]

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CADB institution(s)
Bioinformatics Centre (Centre of Excellence in Structural Biol. & Bio-comput.), Bangalore, India; Supercomputer Education Research Centre, Indian Institute of Science, Bangalore, India
CADB funding source(s)
Supported by the National Bioscience award grant.

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