CAFE specifications


Unique identifier OMICS_18015
Alternative name aCcelerated Alignment-FrEe sequence analysis
Software type Application/Script
Interface Command line interface, Graphical user interface
Input data An assembled genome sequence or an unassembled NGS shotgun read.
Output format PHYLIP
Operating system Mac OS, Windows
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes



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Publication for aCcelerated Alignment-FrEe sequence analysis

CAFE institution(s)
Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, CA, USA; Department of Biological Sciences and Wrigley Institute for Environmental Studies, University of Southern California, Los Angeles, CA, USA; Centre for Computational Systems Biology, School of Mathematical Sciences, Fudan University, Shanghai, China
CAFE funding source(s)
Supported by NSF [DMS-1518001]; OCE [1136818]; NIH [R01GM12062 4]; Gordon and Betty Moore Foundation Marine Microbiology Initiative [GBMF3779].

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