Cap analysis gene expression sequencing data analysis software tools

Cap analysis of gene expression (CAGE) provides accurate high-throughput measurement of RNA expression. By the large-scale analysis of 5' end of transcripts using CAGE method, it enables not only determination of the transcription start site but also prediction of promoter region.

Source text:
(Murata et al., 2014) Detecting expressed genes using CAGE. Methods Mol Biol.

Data preprocessing

Data processing

Data analysis



Data visualization

Network analysis

Enrichment analysis

Integrative analysis


File manipulation

Unclassified tools