Cap analysis gene expression sequencing data analysis software tools

Cap analysis of gene expression (CAGE) provides accurate high-throughput measurement of RNA expression. By the large-scale analysis of 5' end of transcripts using CAGE method, it enables not only determination of the transcription start site but also prediction of promoter region.

Source text:
(Murata et al., 2014) Detecting expressed genes using CAGE. Methods Mol Biol.

Data preprocessing

Data processing

Data analysis

Expression

Annotation

Data visualization

Network analysis

Enrichment analysis

Integrative analysis

Workflows

File manipulation

Unclassified tools