CAGEd-oPOSSUM statistics

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Associated diseases

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CAGEd-oPOSSUM specifications

Information


Unique identifier OMICS_11182
Name CAGEd-oPOSSUM
Interface Web user interface
Restrictions to use None
Programming languages Perl
Database management system MySQL
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Anthony Mathelier <>

Information


Unique identifier OMICS_11182
Name CAGEd-oPOSSUM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

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Maintainer


  • person_outline Anthony Mathelier <>

Publication for CAGEd-oPOSSUM

CAGEd-oPOSSUM in publication

PMCID: 5114649
PMID: 27857184
DOI: 10.1038/srep37324

[…] regulator(s) and mechanism exist to facilitate the escape from xci. we first probed the regulation of the esctsss on chrx at the sequence level through enrichment testing of jaspar motifs using the caged-opossum web tool. merged sequences from 500 bps up- and down-stream of esctsss were compared to two background sets: nondt and a randomly selected %gc and length matched background set […]


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CAGEd-oPOSSUM institution(s)
Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, BC Children’s Hospital, Department of Medical Genetics, University of British Columbia, Vancouver, Canada; Division of Genomic Technologies, RIKEN Center for Life Science Technologies, Yokohama, Kanagawa, Japan; RIKEN Omics Science Center, Wako, Japan; RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Japan; Telethon Kids Institute, The University of Western Australia, Subiaco, WA, Australia

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