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Protocols

CAGEscan-Clustering specifications

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Unique identifier OMICS_07117
Name CAGEscan-Clustering
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Publication for CAGEscan-Clustering

CAGEscan-Clustering citation

call_split

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

2017
Sci Data
PMCID: 5625555
PMID: 28972578
DOI: 10.1038/sdata.2017.147
call_split See protocol

[…] format using the program pairedBamToBed12 version 1.2, in which the score field is the sum of the mapping qualities of each read of the pair. They were then assembled into CAGEscan clusters using the CAGEscan-Clustering script version 1.2 and the Phase 1+2 FANTOM5 DPI CAGE peaks as seeds. The CAGEscan-Clustering script also takes advantage of the BED12 format, reporting the number of CAGEscan pair […]


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CAGEscan-Clustering institution(s)
RIKEN Center for Life Science Technologies, Division of Genomic Technologies, Yokohama, Kanagawa, Japan

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