CaImAn specifications

Information


Unique identifier OMICS_16270
Name CaImAn
Alternative name Calcium Imaging Analysis
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.1
Stability Alpha
Requirements Numpy, Scipy, Matplotlib, SciKit-learn, Tifffile, cvxpy, ipyparallel, opencv
Maintained Yes

Subtool


  • OnACID

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Versioning


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Documentation


Maintainers


  • person_outline Andrea Giovannucci <>
  • person_outline Eftychios Pnevmatikakis <>

Additional information


https://papers.nips.cc/paper/6832-onacid-online-analysis-of-calcium-imaging-data-in-real-time

Publication for Calcium Imaging Analysis

CaImAn institution(s)
Center for Computational Biology, Flatiron Institute, New York, NY, USA; Department of Statistics and Center for Theoretical Neuroscience, Columbia University, New York, NY, USA; ECE Paris, Paris, France; Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA; Department of Neurology, UCLA, California, USA; Cold Spring Harbor Laboratory, New York, NY, USA
CaImAn funding source(s)
Supported by the Simons Foundation, NIH NRSA F32NS077840-01,5U01NS090541, 1011 1U19NS104648 and Simons Foundation SCGB, NIH R01-MH101198, MURI, Simons Collaboration on the Global Brain and Pew Foundation.

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