Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

GPS-CCD | A computational program for the prediction of calpain cleavage sites

Online

Predicts calpain cleavage sites. GPS-CCD is a computational program that was used to annotate potential calpain cleavage sites for hundreds of calpain substrates, for which the exact cleavage sites had not been previously determined. The software is useful for pinpointing potential calpain cleavage sites, while computational predictions followed by experimental verification should lead to an improved identification of calpain substrates in the near future.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

GPS-CCD forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

GPS-CCD classification

GPS-CCD specifications

Unique identifier:
OMICS_01673
Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Programming languages:
Java
Version:
1.0
Maintained:
Yes
Name:
Calpain Cleavage Detector
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Stability:
Stable

GPS-CCD distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

download

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

GPS-CCD forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

GPS-CCD classification

GPS-CCD specifications

Unique identifier:
OMICS_01673
Interface:
Application programming interface
Programming languages:
Java
Stability:
Stable
Name:
Calpain Cleavage Detector
Restrictions to use:
Academic or non-commercial use
Computer skills:
Advanced
Maintained:
Yes

GPS-CCD support

Documentation

Maintainers

  • Jian Ren <>
  • Yu Xue <>
  • Zexian Liu <>
  • Jian Ren <>
  • Yu Xue <>
  • Zexian Liu <>

Additional information

http://ccd.biocuckoo.org/faq.php

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, China; Hubei Bioinformatics and Molecular Imaging Key Laboratory, Department of Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, China; State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University (SYSU), Guangzhou, China

Funding source(s)

Supported by grants from the National Basic Research Program (973 project) (2010CB945400, 2011CB910400), National Natural Science Foundation of China (90919001, 31071154, 30900835, 30830036, 91019020, 21075045), and Fundamental Research Funds for the Central Universities (HUST: 2010JC049, 2010ZD018; SYSU: 11lgzd11, 11lgjc09).

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.