CAMERA protocols

CAMERA specifications

Information


Unique identifier OMICS_01476
Name CAMERA
Alternative name Community cyberinfrastructure for Advanced Microbial Ecology Research & Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No
Wikipedia https://en.wikipedia.org/wiki/Community_Cyberinfrastructure_for_Advanced_Microbial_Ecology_Research_and_Analysis

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Publication for Community cyberinfrastructure for Advanced Microbial Ecology Research & Analysis

CAMERA IN pipelines

 (4)
2015
PMCID: 4426941
PMID: 25983555
DOI: 10.4137/BBI.S12462

[…] archiving policies require the data to be made public; however, there is a 2-year period (upon submission) during which the data is kept private pending user publication of analysis results., camera112 is another online cloud computing service that provides hosted software tools and a high-performance computing infrastructure for the analysis of metagenomic data. one advantage of camera […]

2013
PMCID: 3744670
PMID: 23950114
DOI: 10.1128/genomeA.00540-13

[…] workbench 5.1 (clc bio, denmark) for trimming and de novo assembly (6). assembled sequences were compared against the cyberinfrastructure for advanced microbial ecology research and analysis (camera) for microbial diversity, and its outputs were imported into megan4 software (version 4.64.2) for classifications (7, 8). microorganism abundance was assessed by counting the number of reads., […]

2012
PMCID: 4036008
PMID: 22791056
DOI: 10.1264/jsme2.ME11274

[…] sequences and deduced amino acid sequences were obtained using ncbi’s sequence similarity search tools blastn and blastp (5), the img/m data management and analysis system for metagenomes (26) and camera metagenomic resources (30). deduced amino acids were aligned using clustal w, as provided by mega 4 software followed by visual inspection of the alignment (33). neighbor-joining trees […]

2010
PMCID: 3009484
PMID: 20122183
DOI: 10.1186/1471-2105-11-S1-S12

[…] models for data acquisition and the demands of statistical analysis., a number of facilities provide dedicated computational resources or services for metagenomics, including seed [3], img/m [4] and camera [5]. a number of publications have described new computational approaches (see [6] for an overview). however, many of these are of limited practical use because the authors make little attempt […]

CAMERA institution(s)
J Craig Venter Institute, Chinakville, MD, USA

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