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Camino specifications

Information


Unique identifier OMICS_23384
Name Camino
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Additional information


https://afni.nimh.nih.gov/sscc/staff/rwcox/ISMRM_2006/ISMRM%202006%20-%203340/files/02759.pdf

Camino citations

 (27)
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Childhood Emotional Abuse Moderates Associations Among Corticomotor White Matter Structure and Stress Neuromodulators in Women With and Without Depression

2018
Front Neurosci
PMCID: 5925965
PMID: 29740273
DOI: 10.3389/fnins.2018.00256
call_split See protocol

[…] MRIB Software Library, FSL; Smith et al., ). Images from the first scan session were used for analysis. Tensors were fitted with nonlinear optimization, constrained to be positive semi-definite using Camino (camino.cs.ucl.ac.uk; Cook et al., ). Tensor images were normalized, and scalar maps for fractional anisotropy (FA) and axial, radial, and mean diffusivity were calculated, using Diffusion Tens […]

library_books

Quantifying indices of short and long range white matter connectivity at each cortical vertex

2017
PLoS One
PMCID: 5687731
PMID: 29141024
DOI: 10.1371/journal.pone.0187493

[…] sed registration implemented in FreeSurfer and FSL (https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister). Then, tractography was computed using a deterministic streamline algorithm provided with the camino software (http://camino.cs.ucl.ac.uk). Default parameters were used for the streamlines reconstruction (curvature threshold = 60, number of iterations 50) and a white matter mask obtained from […]

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Bilateral effects of unilateral cerebellar lesions as detected by voxel based morphometry and diffusion imaging

2017
PLoS One
PMCID: 5503258
PMID: 28692678
DOI: 10.1371/journal.pone.0180439
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[…] registration to the first non-diffusion weighted volume using FSL []. After brain segmentation with the Brain Extraction Tool (BET) utility [], the diffusion tensor (DT) coefficients were computed in Camino [] to generate whole brain maps of the DTI metrics including fractional anisotropy (FA), radial diffusivity (RD), mean diffusivity (MD) and axial diffusivity (AD). Each FA volume was registered […]

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Microstructural white matter alterations in preclinical Alzheimer’s disease detected using free water elimination diffusion tensor imaging

2017
PLoS One
PMCID: 5349685
PMID: 28291839
DOI: 10.1371/journal.pone.0173982
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[…] Whole-brain tractography was performed using the fiber assignment by continuous tracking (FACT) algorithm [] as implemented in the Camino software package (http://cmic.cs.ucl.ac.uk/camino/). Tracts were seeded at the center of every voxel with an FA greater than or equal to 0.3. Specific tracts were then reconstructed by constrai […]

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Diffusion imaging of reversible and irreversible microstructural changes within the corticospinal tract in idiopathic normal pressure hydrocephalus

2017
PMCID: 5358533
PMID: 28348958
DOI: 10.1016/j.nicl.2017.03.003
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[…] Virtual diffusion data were generated using a Monte-Carlo random walk simulation implemented in Camino (http://camino.cs.ucl.ac.uk/) (). First, we constructed an undulating cylinder model of axons. The cylinders, which are arranged along the z direction and have diameter of 4 μm, undulate sinuso […]

library_books

AxonPacking: An Open Source Software to Simulate Arrangements of Axons in White Matter

2017
Front Neuroinform
PMCID: 5281605
PMID: 28197091
DOI: 10.3389/fninf.2017.00005

[…] approach in which disks can be removed to avoid overlap and boundary effects. As a consequence the final density is neither optimal nor reproducible, and it cannot be set by the user. An advantage of CAMINO is that edge effects are addressed by reproducing the pattern at the four edges of the image, which can be useful for running Monte Carlo simulations on small substrates. An alternative method […]

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