CAMISIM specifications

Information


Unique identifier OMICS_28851
Name CAMISIM
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A collection of sets of taxonomic IDs of available complete genomes.
Output data A community genome abundance profile.
Output format TSV, FNA
Operating system Unix/Linux
Programming languages Python
License Apache License version 2.0
Computer skills Advanced
Version 1.1.0
Stability Stable
Requirements
Biopython, BIOM, NumPy, Matplotlib, Hmmer, RNAmmer, Mothur, MUMmer, Perl, ART, wgsim, NanoSim, PBsim, SAMtools
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Alice McHardy

Additional information


https://github.com/CAMI-challenge/CAMISIM/wiki/User-manual

Publication for CAMISIM

CAMISIM institution(s)
Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany; Formerly Department of Algorithmic Bioinformatics, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany; German Center for Infection Research (DZIF), partner site Hannover-Braunschweig, Braunschweig, Germany; Center for Biotechnology and Faculty of Technology, Bielefeld University, Bielefeld, Germany; The ithree institute, University of Technology Sydney, Sydney, NSW, Australia
CAMISIM funding source(s)
Supported by the President’s Initiative and Networking Funds of the Helmholtz Association of German Research Centres (HGF) under contract number VH-GS-202 and by EPSRC Grant Number EP/K032208/1, and Victoria Sack.

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