CAMSA specifications

Information


Unique identifier OMICS_12628
Name CAMSA
Alternative name Comparative Analysis and Merging of Scaffold Assemblies
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data CAMSA expect as an input a set of different assemblies on the same set of scaffolds.
Output data CAMSA comparative analysis results are stored in the automatically generated comprehensive report, powered by HTML, CSS and JavaScript. This report format allows one to process the report on any operating system, easily share results with colleges and collaborators, as well as ensure reproducibility of each experiment.
Operating system Unix/Linux, Mac OS
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline S. S. Aganezov <>

Publication for Comparative Analysis and Merging of Scaffold Assemblies

CAMSA institution(s)
Department of Mathematics & Computational Biology Institute, The George Washington University, WA, DC, USA; Department of Higher Mathematics, ITMO University, St Petersburg, Russia
CAMSA funding source(s)
The work is supported by the National Science Foundation under the grant No. IIS-1462107.

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