CAn specifications


Unique identifier OMICS_13628
Name CAn
Alternative name CoverageAnalyzer
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Input data A dataset containing RNA sequencing (RNA Seq) reads mapped to a genome or transcriptome
Input format SAM
Output data Visualization tab (independent plots and differential comparison for mismatch and/or arrest parameters), candidate casting tab
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements Matplotlib, Numpy, Scipy
Maintained Yes



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  • person_outline Ralf Hauenschild <>

Publication for CoverageAnalyzer

CAn institution(s)
Institute of Pharmacy and Biochemistry, Johannes Gutenberg University Mainz, Mainz, Germany; Institute for Computer Sciences, Johannes Gutenberg University Mainz, Mainz, Germany; IMoPA UMR7365 CNRS-UL, BioPole de l’Université de Lorraine, Vandoeuvre-les-Nancy, France
CAn funding source(s)
This work was supported by the DFG SPP1784, MH3397/12-1, MH3397/14-1, by an ANR HTRNAMod ANR-13-ISV8-0001 grant and by a fellowship from the International PhD Programme (IPP) at the Institute of Molecular Biology (IMB) Mainz, funded by the Boehringer Ingelheim Foundation.

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