CHASM specifications


Unique identifier OMICS_00127
Name Cancer-specific High-throughput Annotation of Somatic Mutations
Alternative names CHASM/SNV-Box, CHASMplus
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Python, R, Shell (Bash)
Database management system MySQL
Computer skills Advanced
Version 3.0
Stability Stable
Maintained Yes


  • Animals
    • Homo sapiens


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  • person_outline Rachel Karchin <>
  • person_outline Rachel Karchin <>

CHASM articles

CHASM institution(s)
Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA; Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA; Department of Oncology, Johns Hopkins University, Baltimore, MD, USA
CHASM funding source(s)
Supported by the National Cancer Institute (NCI) Grant F31CA200266 and NCI Grant U24CA204817.

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